fortran_module extension¶
Module
Description
fortran_module description $ use omp_lib
Quick access
| Routines: | simulate_time_series(), simulate_mutations(), continuous_fit_i(), discrete_fit_i(), multiindices(), continuous_fit(), discrete_fit(), num_threads() |
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Variables
Subroutines and functions
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function
fortran_module/num_threads()¶ Return the number of threads that the package can see. If the return value is 1 but there are multiple cpus, then OpenMP is not installed or not properly configured
Return: n [integer]
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subroutine
fortran_module/multiindices(n, m, degs, n_deg, n_idx, n_idx_by_deg, idx_ptr, idx, stratifier)¶ Options: - n [integer,in,optional/default=len(m)]
- n_deg [integer,in,optional/default=len(degs)]
Parameters: - m (n) [integer,in]
- degs (n_deg) [integer,in]
- n_idx [integer,in]
- n_idx_by_deg (n_deg) [integer,in]
- idx_ptr (*) [integer,out]
- idx (*) [integer,out]
- stratifier (*) [integer,out]
Called from:
-
subroutine
fortran_module/simulate_time_series(w, m_sum, n_s, n, m, l, degs, n_deg, x)¶ simulate_time_series description
Parameters: - w (m_sum,n_s) [real,in]
- m (n) [integer,in]
- l [integer,in]
- degs (n_deg) [integer,in]
- x (n,l) [integer,out]
Options: - m_sum [integer,hide/in,optional/default=shape(w,0)]
- n_s [integer,hide/in,optional/default=shape(w,1)]
- n [integer,hide/in,optional/default=len(m)]
- n_deg [integer,hide/in,optional/default=len(degs)]
Call to:
-
subroutine
fortran_module/simulate_mutations(w, m_sum, n_s, n, m, l, degs, n_deg, x, y)¶ simulate_mutations description
Parameters: - w (m_sum,n_s) [real,in]
- m (n) [integer,in]
- l [integer,in]
- degs (n_deg) [integer,in]
- x (n,l) [integer,out]
- y (n,l) [integer,out]
Options: - m_sum [integer,hide/in,optional/default=shape(w,0)]
- n_s [integer,hide/in,optional/default=shape(w,1)]
- n [integer,hide/in,optional/default=len(m)]
- n_deg [integer,hide/in,optional/default=len(degs)]
Call to:
-
subroutine
fortran_module/discrete_fit(x, y, n_x, n_y, m_x, m_y, m_y_sum, l, degs, n_deg, x_oh_pinv1, x_oh_pinv2, x_oh_pinv3, x_oh_rank, n_s, iters, overfit, impute, w, disc, iter)¶ Parameters: - x (n_x,l) [integer,in]
- y (n_y,l) [integer,in]
- m_x (n_x) [integer,in]
- m_y (n_y) [integer,in]
- m_y_sum [integer,in]
- degs (n_deg) [integer,in]
- x_oh_pinv1 (l,x_oh_rank) [real,in]
- x_oh_pinv2 (x_oh_rank) [real,in]
- x_oh_pinv3 (x_oh_rank,n_s) [real,in]
- iters [integer,in]
- overfit [logical,in]
- impute [logical,in]
- w (m_y_sum,n_s) [real,out]
- disc (n_y,iters) [real,out]
- iter (n_y) [integer,out]
Options: - n_x [integer,hide/in,optional/default=shape(x,0)]
- n_y [integer,hide/in,optional/default=shape(y,0)]
- l [integer,hide/in,optional/default=shape(x,1)]
- n_deg [integer,hide/in,optional/default=len(degs)]
- x_oh_rank [integer,hide/in,optional/default=len(x_oh_pinv2)]
- n_s [integer,hide/in,optional/default=shape(x_oh_pinv3,1)]
Call to:
-
subroutine
fortran_module/discrete_fit_i(i1, i2, s, n_idx, y, m_y, l, x_oh_pinv1, x_oh_pinv2, x_oh_pinv3, x_oh_rank, n_s, iters, overfit, impute, w, disc, iter)¶ Parameters: - i1 [integer,in]
- i2 [integer,in]
- s (n_idx,l) [integer,in]
- y (l) [integer,in]
- m_y [integer,in]
- x_oh_pinv1 (l,x_oh_rank) [real,in]
- x_oh_pinv2 (x_oh_rank) [real,in]
- x_oh_pinv3 (x_oh_rank,n_s) [real,in]
- iters [integer,in]
- overfit [logical,in]
- impute [logical,in]
- w (m_y,n_s) [real,out]
- disc (iters) [real,out]
- iter [integer,out]
Options: - n_idx [integer,in,optional/default=shape(s,0)]
- l [integer,in,optional/default=shape(s,1)]
- x_oh_rank [integer,in,optional/default=shape(x_oh_pinv1,1)]
- n_s [integer,in,optional/default=shape(x_oh_pinv3,1)]
Called from:
-
subroutine
fortran_module/continuous_fit(x, y, n, l, iters, atol, rtol, impute, w, disc, iter)¶ Parameters: - x (n,l) [real,in]
- y (n,l) [real,in]
- iters [integer,in]
- atol [real,in]
- rtol [real,in]
- impute [logical,in]
- w (n,n) [real,out]
- disc (n,iters) [real,out]
- iter (n) [integer,out]
Options: - n [integer,hide/in,optional/default=shape(x,0)]
- l [integer,in,optional/default=shape(x,1)]
Call to:
-
subroutine
fortran_module/continuous_fit_i(i, x, n, l, x_mean0, symx, cov_x, ipiv, iters, atol, rtol, impute, w, disc, iter)¶ Parameters: - i [integer,in]
- x (n,l) [real,in]
- x_mean0 (n,l) [real,in]
- symx (l) [real,in]
- cov_x (n,n) [real,in]
- ipiv (n) [integer,in]
- iters [integer,in]
- atol [real,in]
- rtol [real,in]
- impute [logical,in]
- w (n) [real,out]
- disc (iters) [real,out]
- iter [integer,out]
Options: - n [integer,in,optional/default=shape(x,0)]
- l [integer,in,optional/default=shape(x,1)]
Called from: